Introduction
Medical School Lectures
Systemic Pathology
Pathology Residents & Pathologists
Pathology and Social Media
Taxonomy and Classification of Diseases
Pathophysiology
Carcinogenesis, Hallmarks of Cancer
Computational, Digital & Mathematical Pathology
Macroscopy
Autopsy
Guidelines
Treatment and Pathology
Laboratory Management
Stains
Databases and Pathology
Pathology and Other Departments
Patients and Pathology
Statistics, Bioinformatics, and Pathology
Statistics and Bioinformatics
Writing Journal Articles
Bibliometrics
Pathology Meetings
Science
Computers
Games
Appendix

Digital Pathology

Digital Pathology

Mac OS için.svsdosyalarını açacak program ararken bulmuştum QuPath'ı.

QuPath'ın validasyonu kolon tümörlerinde CD3, CD8, p53 ve PD-L1 skorlaması yanısıra H&E preparatlarındaki tümör-stroma oranı ile yapılmış. Örnekler TMA üzerinde, kod ile ve otomatik analiz ile skorlanmış. Önemli bir nokta skorlamalar sağ kalım ile de karşılaştırılmış.

QuPath: Open source software for digital pathology image analysis Scientific Reports volume 7, Article number: 16878 (2017) doi:10.1038/s41598-017-17204-5

QuPath'ın oldukça iyi eğitim dökümanları var:

https://github.com/qupath/qupath/wiki

Makaledeki videolar şunlar:

MOESM2_ESM.mov

MOESM3_ESM.mov

Makalenin referans verdiği diğer dijital analiz araçlarının makaleleri ise şunlar:

https://digitalpathologyassociation.org/whole-slide-imaging-repository

https://digitalpathologyassociation.org/

  • Websites

https://pathpresenter.com/

http://www.rosaicollection.org/

http://cancer.digitalslidearchive.net/

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

https://academic.oup.com/jamia/article/20/6/1091/703483

  • Johns Hopkins Pathology Unknowns

https://digital.pathology.johnshopkins.edu/repos/451

  • Softwares

http://www.virasoft.com.tr/

http://en.mydigipath.com/

https://qupath.github.io/

http://www.microvisioneer.com/

http://virtualvizyon.com/

https://easyzoom.com/

  • Easy Scanner

https://twitter.com/argenitt/status/814824189345624064

  • Smartphone Whole Slide Imaging(sWSI) Demo--Low Cost Slide Scanner.

https://www.youtube.com/watch?v=orcYKy19mjQ

https://micro-manager.org/

  • Google's interest in digital pathology is very important for our field. See 55th minute

https://youtu.be/Y2VF8tmLFHw?t=55m11s

https://research.googleblog.com/2017/03/assisting-pathologists-in-detecting.html

  • Detecting Cancer Metastases on Gigapixel Pathology Images

https://arxiv.org/abs/1703.02442

  • Manual Microscope Image Stitching

https://www.meyerinst.com/digital/image-stitching/

  • Motic EASY SCAN PRO Pathology Slide Scanner

https://www.meyerinst.com/motic-easy-scan-pro-digital-slide-scanner/

https://www.viewsiq.com/panoptiq

  • Metadata matters: access to image data in the real world

http://jcb.rupress.org/content/189/5/777

  • Detecting cancer in real-time with machine learning

https://www.youtube.com/watch?v=9Mz84cwVmS0

An Augmented Reality Microscope for Cancer Detection

An Augmented Reality Microscope for Real-time Automated Detection of Cancer