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Digital Pathology

Argenit

X-WOW

X-WOW Whole Slide Scanning System
Please note: this is product comes with 2 partsX-WOW Whole Slide Imaging Software Professional EditionHigh End Area Scanning Camera (our software also compatible with many other cameras. Contact us for more details)Shipping world-wide, price includes tax and deliveryPlease note monthly rental is also available at £250/momth (refundable £300 Deposit is Required) (Before you buy!) Please note, You will need:A trinocular microscope with a camera port and a camera c-mount adapterA high-end computer with 64bits Windows/USB 3.0,Please contact with us to check if both your microscope and PC meet the minimum system requirement. Optionally, you can purchase the following componants from us:Extra function which allows you to share slide instantly from your own computersubscription fee (1 year) £1190.00 Please note the price we offer is slightly lower than the retail price. We usually price match to make sure you get the best deal from us. Most important it will help us make more microscopes availble in deprived areas, and your support will be achknowledged. Our previous projects can be found at: https://www.x-wow.com/story Product details:Our whole slide imaging system offers real-time microscopic panorama stitching technology. The system offers real-time results in a matter of seconds so you can scan conventional glass slides and product digital slides. The most recent technology available in slide imaging and scanning designed to ensure quick and effective results. Once you have scanned the slide it can easily be shared with medical departments all around the world in a matter of minutes. With this compact WSI system, you will be able to capture, store and share the glass slides digitally and enjoy high-resolution images that can be displayed on any monitor or screen. Making diagnosing and teaching processes easier. - Feature: Slide Scanning- Convert: Slide to Digital File- Connection: View & Share Instantly from your laptop The all-in-one system will be delivered to you in 15-30 days. Please get in touch if you already own any of the componants to recieve a customised quote.
www.x-wow.com

QuPath

Mac OS için.svsdosyalarını açacak program ararken bulmuştum QuPath'ı.

QuPath'ın validasyonu kolon tümörlerinde CD3, CD8, p53 ve PD-L1 skorlaması yanısıra H&E preparatlarındaki tümör-stroma oranı ile yapılmış. Örnekler TMA üzerinde, kod ile ve otomatik analiz ile skorlanmış. Önemli bir nokta skorlamalar sağ kalım ile de karşılaştırılmış.

QuPath: Open source software for digital pathology image analysis Scientific Reports volume 7, Article number: 16878 (2017) doi:10.1038/s41598-017-17204-5

QuPath'ın oldukça iyi eğitim dökümanları var:

https://github.com/qupath/qupath/wiki

Makaledeki videolar şunlar:

MOESM2_ESM.mov

MOESM3_ESM.mov

Makalenin referans verdiği diğer dijital analiz araçlarının makaleleri ise şunlar:

https://digitalpathologyassociation.org/whole-slide-imaging-repository

https://digitalpathologyassociation.org/

  • Websites

https://pathpresenter.com/

http://www.rosaicollection.org/

http://cancer.digitalslidearchive.net/

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

https://academic.oup.com/jamia/article/20/6/1091/703483

  • Johns Hopkins Pathology Unknowns

https://digital.pathology.johnshopkins.edu/repos/451

  • Softwares

http://www.virasoft.com.tr/

http://en.mydigipath.com/

https://qupath.github.io/

http://www.microvisioneer.com/

http://virtualvizyon.com/

https://easyzoom.com/

  • Easy Scanner

https://twitter.com/argenitt/status/814824189345624064

  • Smartphone Whole Slide Imaging(sWSI) Demo--Low Cost Slide Scanner.

https://www.youtube.com/watch?v=orcYKy19mjQ

https://micro-manager.org/

  • Google's interest in digital pathology is very important for our field. See 55th minute

https://youtu.be/Y2VF8tmLFHw?t=55m11s

https://research.googleblog.com/2017/03/assisting-pathologists-in-detecting.html

  • Detecting Cancer Metastases on Gigapixel Pathology Images

https://arxiv.org/abs/1703.02442

  • Manual Microscope Image Stitching

https://www.meyerinst.com/digital/image-stitching/

  • Motic EASY SCAN PRO Pathology Slide Scanner

https://www.meyerinst.com/motic-easy-scan-pro-digital-slide-scanner/

https://www.viewsiq.com/panoptiq

  • Metadata matters: access to image data in the real world

http://jcb.rupress.org/content/189/5/777

  • Detecting cancer in real-time with machine learning

https://www.youtube.com/watch?v=9Mz84cwVmS0

An Augmented Reality Microscope for Cancer Detection

An Augmented Reality Microscope for Real-time Automated Detection of Cancer

  • Whole Slide Imaging Versus Microscopy for Primary Diagnosis in Surgical Pathology: A Multicenter Blinded Randomized Noninferiority Study of 1992 Cases (Pivotal Study).

http://journals.lww.com/ajsp/Abstract/publishahead/Whole_Slide_Imaging_Versus_Microscopy_for_Primary.97978.aspx

  • The Gold Standard Paradox in Digital Image Analysis Manual Versus Automated Scoring as Ground Truth

Arch Pathol Lab Med. 2017 May 30. PMID: 28557614 DOI: 10.5858/arpa.2016-0386-RA

About the Usage of Digital Pathology

  • Whole Slide Imaging Versus Microscopy for Primary Diagnosis in Surgical Pathology: A Multicenter Blinded Randomized Noninferiority Study of 1992 Cases (Pivotal Study).

http://journals.lww.com/ajsp/Abstract/publishahead/Whole_Slide_Imaging_Versus_Microscopy_for_Primary.97978.aspx

  • The Gold Standard Paradox in Digital Image Analysis Manual Versus Automated Scoring as Ground Truth

Arch Pathol Lab Med. 2017 May 30. PMID: 28557614 DOI: 10.5858/arpa.2016-0386-RA

  • Whole Slide Imaging Versus Microscopy for Primary Diagnosis in Surgical Pathology: A Multicenter Blinded Randomized Noninferiority Study of 1992 Cases (Pivotal Study).

http://journals.lww.com/ajsp/Abstract/publishahead/Whole_Slide_Imaging_Versus_Microscopy_for_Primary.97978.aspx

  • The Gold Standard Paradox in Digital Image Analysis Manual Versus Automated Scoring as Ground Truth

Arch Pathol Lab Med. 2017 May 30. PMID: 28557614 DOI: 10.5858/arpa.2016-0386-RA

  • Whole Slide Imaging Versus Microscopy for Primary Diagnosis in Surgical Pathology: A Multicenter Blinded Randomized Noninferiority Study of 1992 Cases (Pivotal Study).

http://journals.lww.com/ajsp/Abstract/publishahead/Whole_Slide_Imaging_Versus_Microscopy_for_Primary.97978.aspx

  • The Gold Standard Paradox in Digital Image Analysis Manual Versus Automated Scoring as Ground Truth

Arch Pathol Lab Med. 2017 May 30. PMID: 28557614 DOI: 10.5858/arpa.2016-0386-RA

Digital Pathology

Mac OS için.svsdosyalarını açacak program ararken bulmuştum QuPath'ı.

QuPath'ın validasyonu kolon tümörlerinde CD3, CD8, p53 ve PD-L1 skorlaması yanısıra H&E preparatlarındaki tümör-stroma oranı ile yapılmış. Örnekler TMA üzerinde, kod ile ve otomatik analiz ile skorlanmış. Önemli bir nokta skorlamalar sağ kalım ile de karşılaştırılmış.

QuPath: Open source software for digital pathology image analysis Scientific Reports volume 7, Article number: 16878 (2017) doi:10.1038/s41598-017-17204-5

QuPath'ın oldukça iyi eğitim dökümanları var:

https://github.com/qupath/qupath/wiki

Makaledeki videolar şunlar:

MOESM2_ESM.mov

MOESM3_ESM.mov

Makalenin referans verdiği diğer dijital analiz araçlarının makaleleri ise şunlar:

https://digitalpathologyassociation.org/whole-slide-imaging-repository

https://digitalpathologyassociation.org/

  • Websites

https://pathpresenter.com/

http://www.rosaicollection.org/

http://cancer.digitalslidearchive.net/

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

https://academic.oup.com/jamia/article/20/6/1091/703483

  • Johns Hopkins Pathology Unknowns

https://digital.pathology.johnshopkins.edu/repos/451

  • Softwares

http://www.virasoft.com.tr/

http://en.mydigipath.com/

https://qupath.github.io/

http://www.microvisioneer.com/

http://virtualvizyon.com/

https://easyzoom.com/

  • Easy Scanner

https://twitter.com/argenitt/status/814824189345624064

  • Smartphone Whole Slide Imaging(sWSI) Demo--Low Cost Slide Scanner.

https://www.youtube.com/watch?v=orcYKy19mjQ

https://micro-manager.org/

  • Google's interest in digital pathology is very important for our field. See 55th minute

https://youtu.be/Y2VF8tmLFHw?t=55m11s

https://research.googleblog.com/2017/03/assisting-pathologists-in-detecting.html

  • Detecting Cancer Metastases on Gigapixel Pathology Images

https://arxiv.org/abs/1703.02442

  • Manual Microscope Image Stitching

https://www.meyerinst.com/digital/image-stitching/

  • Motic EASY SCAN PRO Pathology Slide Scanner

https://www.meyerinst.com/motic-easy-scan-pro-digital-slide-scanner/

https://www.viewsiq.com/panoptiq

  • Metadata matters: access to image data in the real world

http://jcb.rupress.org/content/189/5/777

  • Detecting cancer in real-time with machine learning

https://www.youtube.com/watch?v=9Mz84cwVmS0

An Augmented Reality Microscope for Cancer Detection

An Augmented Reality Microscope for Real-time Automated Detection of Cancer

Mac OS için.svsdosyalarını açacak program ararken bulmuştum QuPath'ı.

QuPath'ın validasyonu kolon tümörlerinde CD3, CD8, p53 ve PD-L1 skorlaması yanısıra H&E preparatlarındaki tümör-stroma oranı ile yapılmış. Örnekler TMA üzerinde, kod ile ve otomatik analiz ile skorlanmış. Önemli bir nokta skorlamalar sağ kalım ile de karşılaştırılmış.

QuPath: Open source software for digital pathology image analysis Scientific Reports volume 7, Article number: 16878 (2017) doi:10.1038/s41598-017-17204-5

QuPath'ın oldukça iyi eğitim dökümanları var:

https://github.com/qupath/qupath/wiki

Makaledeki videolar şunlar:

MOESM2_ESM.mov

MOESM3_ESM.mov

Makalenin referans verdiği diğer dijital analiz araçlarının makaleleri ise şunlar:

https://digitalpathologyassociation.org/whole-slide-imaging-repository

https://digitalpathologyassociation.org/

  • Websites

https://pathpresenter.com/

http://www.rosaicollection.org/

http://cancer.digitalslidearchive.net/

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

https://academic.oup.com/jamia/article/20/6/1091/703483

  • Johns Hopkins Pathology Unknowns

https://digital.pathology.johnshopkins.edu/repos/451

  • Softwares

http://www.virasoft.com.tr/

http://en.mydigipath.com/

https://qupath.github.io/

http://www.microvisioneer.com/

http://virtualvizyon.com/

https://easyzoom.com/

  • Easy Scanner

https://twitter.com/argenitt/status/814824189345624064

  • Smartphone Whole Slide Imaging(sWSI) Demo--Low Cost Slide Scanner.

https://www.youtube.com/watch?v=orcYKy19mjQ

https://micro-manager.org/

  • Google's interest in digital pathology is very important for our field. See 55th minute

https://youtu.be/Y2VF8tmLFHw?t=55m11s

https://research.googleblog.com/2017/03/assisting-pathologists-in-detecting.html

  • Detecting Cancer Metastases on Gigapixel Pathology Images

https://arxiv.org/abs/1703.02442

  • Manual Microscope Image Stitching

https://www.meyerinst.com/digital/image-stitching/

  • Motic EASY SCAN PRO Pathology Slide Scanner

https://www.meyerinst.com/motic-easy-scan-pro-digital-slide-scanner/

https://www.viewsiq.com/panoptiq

  • Metadata matters: access to image data in the real world

http://jcb.rupress.org/content/189/5/777

  • Detecting cancer in real-time with machine learning

https://www.youtube.com/watch?v=9Mz84cwVmS0

An Augmented Reality Microscope for Cancer Detection

An Augmented Reality Microscope for Real-time Automated Detection of Cancer